Basic Information
Locus ID:
nbisL1-mrna-10555
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
G3BP-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 8745545 | 8748758 | + | nbisL1-mrna-10555 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.32 | 50,180.55 Da | 49.73 | 66.69 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00590 | RRM_SF | 296 | 365 | 5.08698E-10 | - |
| CDD | cd00780 | NTF2 | 11 | 133 | 3.64064E-46 | IPR018222 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 296 | 352 | 5.6E-7 | IPR000504 |
| Pfam | PF02136 | Nuclear transport factor 2 (NTF2) domain | 15 | 131 | 8.5E-32 | IPR002075 |
| SUPERFAMILY | SSF54427 | NTF2-like | 12 | 132 | 1.85E-35 | IPR032710 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 290 | 401 | 4.48E-16 | IPR035979 |
| Gene3D | G3DSA:3.10.450.50 | - | 9 | 136 | 5.3E-36 | - |
| Gene3D | G3DSA:3.30.70.330 | - | 271 | 406 | 1.8E-15 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 295 | 365 | 2.6E-9 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 294 | 369 | 10.905961 | IPR000504 |
| ProSiteProfiles | PS50177 | Nuclear transport factor 2 domain profile. | 15 | 131 | 31.851358 | IPR018222 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 183 | 219 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 408 | 427 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 141 | 160 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 199 | 219 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 366 | 450 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 289 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 251 | 285 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25150.1 | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain. | 0 |
| RefSeq | XP_021690372.1 | putative G3BP-like protein [Hevea brasiliensis] | 0 |
| Q9FME2 | Nuclear transport factor 2 OS=Arabidopsis thaliana OX=3702 GN=NTF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067JQW7 | G3BP-like protein OS=Jatropha curcas OX=180498 GN=JCGZ_17509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology