Basic Information
Locus ID:
nbisL1-mrna-10504
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
DNA repair protein recA homolog 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 2138075 | 2144152 | + | nbisL1-mrna-10504 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.01 | 43,221.00 Da | 33.38 | 88.13 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00983 | recA | 45 | 368 | 0.0 | IPR013765 |
| Pfam | PF00154 | recA bacterial DNA recombination protein | 48 | 310 | 2.8E-117 | IPR013765 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 46 | 309 | 6.9E-55 | IPR027417 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 310 | 367 | 4.71E-18 | IPR023400 |
| Gene3D | G3DSA:3.40.50.300 | - | 75 | 374 | 1.9E-102 | IPR027417 |
| SMART | SM00382 | AAA_5 | 97 | 268 | 3.5E-9 | IPR003593 |
| TIGRFAM | TIGR02012 | tigrfam_recA: protein RecA | 45 | 365 | 2.4E-143 | IPR013765 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 76 | 234 | 28.49151 | IPR020588 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 239 | 314 | 28.19068 | IPR020587 |
| ProSitePatterns | PS00321 | recA signature. | 253 | 261 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 205 | 234 | 6.9E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 339 | 356 | 6.9E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 133 | 162 | 6.9E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 250 | 278 | 6.9E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 167 | 196 | 6.9E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 285 | 314 | 6.9E-76 | IPR013765 |
| Hamap | MF_00268 | Protein RecA [recA]. | 46 | 371 | 44.931515 | IPR013765 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79050.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_021595011.1 | DNA repair protein recA homolog 1, chloroplastic [Manihot esculenta] | 0 |
| Q39199 | DNA repair protein recA homolog 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RECA PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2K448 | Uncharacterized protein MANES_15G102600 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology