Basic Information
Locus ID:
nbisL1-mrna-1050
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 8479258 | 8482470 | - | nbisL1-mrna-1050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 67,031.33 Da | 42.39 | 82.36 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00028 | B_lectin | 24 | 137 | 6.40645E-29 | IPR001480 |
| Pfam | PF01453 | D-mannose binding lectin | 65 | 163 | 3.5E-28 | IPR001480 |
| Pfam | PF08276 | PAN-like domain | 331 | 388 | 4.6E-12 | IPR003609 |
| Pfam | PF00954 | S-locus glycoprotein domain | 195 | 302 | 3.5E-22 | IPR000858 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 62 | 200 | 3.66E-23 | IPR036426 |
| Gene3D | G3DSA:2.90.10.10 | - | 10 | 134 | 7.0E-19 | IPR036426 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 461 | 561 | 8.5E-7 | - |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 273 | 321 | 1.6E-6 | - |
| SMART | SM00473 | ntp_6 | 331 | 406 | 0.0012 | IPR003609 |
| SMART | SM00108 | blect_4 | 22 | 137 | 4.8E-28 | IPR001480 |
| ProSiteProfiles | PS50948 | PAN/Apple domain profile. | 324 | 407 | 8.984032 | IPR003609 |
| ProSiteProfiles | PS50927 | Bulb-type lectin domain profile. | 16 | 135 | 15.215561 | IPR001480 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19130.1 | S-locus lectin protein kinase family protein. | 0 |
| RefSeq | XP_039013621.1 | receptor-like serine/threonine-protein kinase SD1-7 [Hibiscus syriacus] | 0 |
| O64477 | G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 OS=Arabidopsis thaliana OX=3702 GN=At2g19130 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A2ZJS9 | Receptor-like serine/threonine-protein kinase OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110847pilonHSYRG00290 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 2 | pistato.v30129710, pistato.v30160120 |
| Casuarinaceae | Casuarina equisetifolia | 14 | Ceq01G1391, Ceq01G1393, Ceq01G1394, Ceq01G1396, Ceq01G1397 ... |
| Casuarinaceae | Casuarina glauca | 25 | Cgl01G1556, Cgl01G1558, Cgl01G1559, Cgl01G1561, Cgl01G1566 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1050 |
| Poaceae | Triticum aestivum | 1 | TraesCS2A02G535100.1 |