Basic Information
Locus ID:
nbisL1-mrna-10481
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Ribonuclease E G-like protein, chloroplastic
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 8259572 | 8270953 | - | nbisL1-mrna-10481 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 136,868.77 Da | 52.24 | 84.95 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05467 | CBM20 | 329 | 428 | 1.5832E-16 | - |
| Pfam | PF00686 | Starch binding domain | 327 | 420 | 3.9E-16 | IPR002044 |
| Pfam | PF10150 | Ribonuclease E/G family | 790 | 1069 | 1.0E-86 | IPR019307 |
| Pfam | PF13639 | Ring finger domain | 103 | 146 | 8.8E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 98 | 151 | 1.11E-14 | - |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 326 | 429 | 1.74E-20 | IPR013784 |
| Gene3D | G3DSA:2.40.50.140 | - | 689 | 787 | 1.0E-6 | - |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 318 | 430 | 4.3E-20 | IPR013783 |
| Gene3D | G3DSA:2.40.50.140 | - | 574 | 684 | 1.5E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 99 | 150 | 1.2E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 104 | 145 | 2.3E-6 | IPR001841 |
| SMART | SM01065 | CBM_20_2 | 326 | 422 | 1.5E-10 | IPR002044 |
| TIGRFAM | TIGR00757 | RNaseEG: ribonuclease, Rne/Rng family | 692 | 1101 | 7.0E-98 | IPR004659 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 104 | 146 | 12.799091 | IPR001841 |
| ProSiteProfiles | PS51166 | CBM20 (carbohydrate binding type-20) domain profile. | 321 | 430 | 16.97554 | IPR002044 |
| Coils | Coil | Coil | 994 | 1014 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G04270.1 | RNAse E/G-like. Similar to E.coli endoribonuclease E. Functions as a ribonuclease, is located in the chloroplast, and is involved in chloroplast development. Loss of function mutants are white and arrest at the cotyledon stage. The phenotype is rescued by providing sucrose. | 0 |
| RefSeq | XP_021680865.1 | ribonuclease E/G-like protein, chloroplastic isoform X1 [Hevea brasiliensis] | 0 |
| F4IV66 | Ribonuclease E/G-like protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RNE PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2LE71 | Uncharacterized protein MANES_12G064500 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg25127 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13393 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah012693 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g152480 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg42389, Sbi_jg44971, Sbi_jg44972 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg27170 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002305 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl31884, Sgl31885, Sgl37162, Sgl37163 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000013258, gene:ENSEOMG00000026774 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.6AG0008150, CQ.Regalona.r1.6AG0008170 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30016860 |
| Apiaceae | Apium graveolens | 1 | Ag7G02421 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G011290 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103702373 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.873.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G08139 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G04270.5 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10002385m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g23150.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g034680.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2241 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2331 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g04410 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g17460 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.2289 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00022399 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G27755 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.1041, BH08.1080, CH08.1190 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0625870, gene-QOZ80_8BG0653860 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0692650.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_031618, gene-QYE76_031619 |
| Poaceae | Oryza coarctata | 1 | Oco16G006050 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g23430.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G243900 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr16G012600, Chr17G011940, Chr17G011950 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G483500 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC7BG029110 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G285800.3, TraesCS7B02G177700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb038720_P004 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-46595 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g23936 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG16.1566, evm.TU.LG26.100 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g08830 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.1649 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-31681 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16332 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10870 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.949 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013245 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10481 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15587 |
| Salicaceae | Populus euphratica | 1 | populus_peu26866 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621746 |
| Solanaceae | Solanum chilense | 1 | SOLCI002645400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011341 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3079 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G2459 |
| Zosteraceae | Zostera marina | 1 | Zosma03g09120.v3.1 |