Basic Information
Locus ID:
nbisL1-mrna-10462
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Receptor homology region, transmembrane domain- and RING domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 7804146 | 7805936 | - | nbisL1-mrna-10462 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.80 | 32,090.97 Da | 38.28 | 98.14 | 0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 224 | 267 | 7.67119E-19 | - |
| CDD | cd02123 | PA_C_RZF_like | 17 | 160 | 2.44062E-36 | IPR044744 |
| Pfam | PF02225 | PA domain | 57 | 137 | 3.7E-8 | IPR003137 |
| Pfam | PF13639 | Ring finger domain | 224 | 267 | 1.6E-11 | IPR001841 |
| SUPERFAMILY | SSF52025 | PA domain | 78 | 141 | 5.89E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 224 | 274 | 1.6E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 200 | 275 | 2.2E-20 | IPR013083 |
| Gene3D | G3DSA:3.50.30.30 | - | 35 | 150 | 1.9E-21 | - |
| SMART | SM00184 | ring_2 | 225 | 266 | 1.2E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 225 | 267 | 12.769585 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66160.2 | receptor homology region transmembrane domain ring H2 motif protein 1. Encodes a receptor homology region transmembrane domain, ring H2 motif protein involved in transport of storage proteins to protein storage vacuoles. Co-localizes with DIP positive vesicles. | 0 |
| RefSeq | XP_039069687.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 1-like isoform X2 [Hibiscus syriacus] | 0 |
| Q9M622 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=RMR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A3BJ22 | Receptor-like proteiny region, transmembrane domain-and RING domain-containing protein 1 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110159pilonHSYRG00248 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology