Basic Information
Locus ID:
nbisL1-mrna-10445
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 7690425 | 7692281 | + | nbisL1-mrna-10445 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.81 | 47,861.41 Da | 46.72 | 90.21 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 65 | 335 | 2.81745E-94 | - |
| Pfam | PF00069 | Protein kinase domain | 63 | 331 | 3.3E-40 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 42 | 334 | 8.63E-75 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 138 | 346 | 4.3E-55 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 33 | 137 | 4.8E-29 | - |
| SMART | SM00220 | serkin_6 | 59 | 338 | 5.5E-26 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 59 | 338 | 37.417656 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 65 | 87 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 182 | 194 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 348 | 371 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G07870.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_039012391.1 | probable serine/threonine-protein kinase PBL11 [Hibiscus syriacus] | 0 |
| Q9LQQ8 | Probable serine/threonine-protein kinase PBL5 OS=Arabidopsis thaliana OX=3702 GN=PBL5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A3AVI0 | Protein kinase domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110377pilonHSYRG00411 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 1 | pistato.v30211530 |
| Apiaceae | Apium graveolens | 1 | Ag7G02425 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G015190 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103708723 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.2197.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G01419 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0118 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10445 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00001039 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.65 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-16983 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13644 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11680 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.1318 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15692 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2967 |
| Salicaceae | Populus euphratica | 1 | populus_peu14081 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132623240 |
| Solanaceae | Solanum chilense | 1 | SOLCI002961600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011150 |