Basic Information
Locus ID:
nbisL1-mrna-1044
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 10544739 | 10547666 | - | nbisL1-mrna-1044 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.61 | 45,689.59 Da | 32.98 | 78.33 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 138 | 174 | 2.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 286 | 320 | 0.0013 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 137 | 410 | 1.77E-41 | IPR036322 |
| Gene3D | G3DSA:3.30.1370.210 | - | 22 | 129 | 9.1E-8 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 130 | 196 | 2.1E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 206 | 417 | 5.2E-28 | IPR015943 |
| SMART | SM00356 | c3hfinal6 | 25 | 49 | 0.47 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 106 | 130 | 2.0 | IPR000571 |
| SMART | SM00320 | WD40_4 | 284 | 321 | 2.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 135 | 174 | 5.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 325 | 368 | 19.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 371 | 408 | 19.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 244 | 281 | 2.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 142 | 183 | 14.084198 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 24 | 50 | 10.755779 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 104 | 131 | 10.436549 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 142 | 174 | 11.154684 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 251 | 290 | 9.305395 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 268 | 282 | 3.0E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 161 | 175 | 3.0E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 308 | 322 | 3.0E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 55 | 77 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_021615892.1 | zinc finger CCCH domain-containing protein 48 isoform X2 [Manihot esculenta] | 0 |
| Q9FNZ2 | Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana OX=3702 GN=ZFWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2M7Y4 | Uncharacterized protein MANES_06G142500 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology