Basic Information
Locus ID:
nbisL1-mrna-10436
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
PB1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr05 | 1420370 | 1427221 | - | nbisL1-mrna-10436 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.96 | 144,229.14 Da | 41.77 | 74.00 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06410 | PB1_UP2 | 188 | 281 | 6.8942E-40 | - |
| CDD | cd13999 | STKc_MAP3K-like | 1024 | 1280 | 1.3801E-106 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1019 | 1280 | 2.5E-61 | IPR001245 |
| Pfam | PF00564 | PB1 domain | 202 | 270 | 2.0E-14 | IPR000270 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1010 | 1280 | 3.19E-75 | IPR011009 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 200 | 285 | 1.31E-17 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1105 | 1300 | 3.4E-51 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1010 | 1104 | 6.1E-25 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 205 | 282 | 9.7E-11 | - |
| SMART | SM00220 | serkin_6 | 1017 | 1282 | 6.7E-59 | IPR000719 |
| SMART | SM00666 | PB1_new | 199 | 281 | 8.9E-23 | IPR000270 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1017 | 1282 | 40.597809 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1023 | 1044 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1142 | 1154 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1207 | 1229 | 5.2E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1136 | 1154 | 5.2E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1251 | 1273 | 5.2E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1099 | 1112 | 5.2E-13 | IPR001245 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79570.1 | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain. | 0 |
| RefSeq | XP_034925410.1 | - | 0 |
| Q9SAJ2 | RAF-like serine/threonine-protein kinase 20 OS=Arabidopsis thaliana OX=3702 GN=RAF20 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JWA4 | Protein kinase domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology