Basic Information
Locus ID:
nbisL1-mrna-10381
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Short Name:
AFB3
Description:
transport inhibitor response
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 7219021 | 7222007 | + | nbisL1-mrna-10381 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.71 | 64,598.38 Da | 46.64 | 96.99 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 61 | 107 | 4.3E-24 | IPR041101 |
| Pfam | PF18511 | F-box | 2 | 41 | 1.5E-19 | IPR041567 |
| SUPERFAMILY | SSF52047 | RNI-like | 15 | 530 | 8.44E-35 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 40 | 4.1E-18 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 41 | 572 | 1.6E-177 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 124 | 149 | 11.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 178 | 204 | 590.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 309 | 332 | 300.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 366 | 390 | 0.52 | IPR006553 |
| SMART | SM00256 | fbox_2 | 4 | 45 | 5.0E-4 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 426 | 449 | 300.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 475 | 500 | 67.0 | IPR006553 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26810.1 | auxin signaling F-box 2. | 0 |
| RefSeq | XP_038997643.1 | protein AUXIN SIGNALING F-BOX 2-like [Hibiscus syriacus] | 0 |
| Q9LW29 | Protein AUXIN SIGNALING F-BOX 2 OS=Arabidopsis thaliana OX=3702 GN=AFB2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A3BYS9 | Protein AUXIN SIGNALING F-BOX 3 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00109916pilonHSYRG00152 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology