Basic Information
Locus ID:
nbisL1-mrna-1036
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 8378013 | 8380466 | - | nbisL1-mrna-1036 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.22 | 25,654.94 Da | 50.78 | 57.41 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04714 | BAH_BAHCC1 | 31 | 165 | 1.28373E-57 | - |
| Pfam | PF00628 | PHD-finger | 149 | 197 | 2.0E-8 | IPR019787 |
| Pfam | PF01426 | BAH domain | 32 | 144 | 5.1E-24 | IPR001025 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 141 | 200 | 9.3E-18 | IPR011011 |
| Gene3D | G3DSA:2.30.30.490 | - | 3 | 141 | 2.2E-32 | IPR043151 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 142 | 212 | 2.8E-19 | IPR013083 |
| SMART | SM00439 | BAH_4 | 30 | 145 | 5.6E-42 | IPR001025 |
| SMART | SM00249 | PHD_3 | 149 | 196 | 2.9E-6 | IPR001965 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 30 | 145 | 23.980923 | IPR001025 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 147 | 198 | 8.8225 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 150 | 195 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22140.2 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein. | 0 |
| RefSeq | XP_016688183.1 | chromatin remodeling protein EBS [Gossypium hirsutum] | 0 |
| F4JL28 | Chromatin remodeling protein EBS OS=Arabidopsis thaliana OX=3702 GN=EBS PE=1 SV=1 | 0 | |
| TrEMBL | A0A5D2GIS9 | Chromatin remodeling protein EBS-like OS=Gossypium darwinii OX=34276 GN=ES288_A05G185200v1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology