Basic Information
Locus ID:
nbisL1-mrna-10341
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
LRR receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 21924566 | 21927001 | - | nbisL1-mrna-10341 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.48 | 89,510.67 Da | 37.72 | 105.78 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 259 | 318 | 5.4E-8 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 114 | 174 | 4.8E-7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 25 | 75 | 1.8E-8 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 566 | 588 | 0.057 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 673 | 716 | 8.3E-8 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 185 | 490 | 2.38E-54 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 384 | 720 | 4.39E-48 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 113 | 222 | 6.24E-17 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 25 | 205 | 1.8E-35 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 473 | 755 | 1.7E-75 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 206 | 324 | 2.1E-31 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 325 | 472 | 7.9E-32 | IPR032675 |
| SMART | SM00365 | LRR_sd22_2 | 257 | 283 | 1.2 | - |
| SMART | SM00365 | LRR_sd22_2 | 679 | 708 | 83.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 305 | 326 | 210.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 564 | 590 | 730.0 | - |
| SMART | SM00369 | LRR_typ_2 | 112 | 136 | 360.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 185 | 209 | 12.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 703 | 726 | 140.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 281 | 305 | 15.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 233 | 256 | 180.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 257 | 280 | 93.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 137 | 161 | 120.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 517 | 541 | 370.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 564 | 587 | 24.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 679 | 702 | 34.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 655 | 678 | 330.0 | IPR003591 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 564 | 577 | 1.8E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 356 | 369 | 1.8E-5 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04220.1 | receptor like protein 46. | 0 |
| RefSeq | XP_002297619.4 | receptor-like protein 46 [Populus trichocarpa] | 0 |
| F4JGB6 | Receptor-like protein 46 OS=Arabidopsis thaliana OX=3702 GN=RLP46 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2K2BQ81 | LRRNT_2 domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G003200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18890 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021381 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g056200 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000032386 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.3BG0017740 |
| Anacardiaceae | Pistacia vera | 6 | pistato.v30085600, pistato.v30085610, pistato.v30085720 ... |
| Apiaceae | Apium graveolens | 5 | Ag1G01409, Ag1G01533, Ag1G01534, Ag3G00393, Ag9G01364 |
| Arecaceae | Cocos nucifera | 1 | scaffold001583G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103718375 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G03062, Ftri16G18592 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G04220.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10027707m.g.v1.0, Thhalv10027711m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g02900.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB04g018820.2N, BniB04g018840.2N, BniB07g033940.2N |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.2115, evm.TU.LG15.1016 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.19 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10341 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20621 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17663 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000018l.391 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002965 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-24363 |
| Salicaceae | Populus euphratica | 1 | populus_peu04482 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132607114 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8519 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1643 |