Basic Information
Locus ID:
nbisL1-mrna-10321
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 6881616 | 6886028 | + | nbisL1-mrna-10321 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.79 | 37,843.23 Da | 47.33 | 89.86 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00201 | WW | 108 | 138 | 9.63214E-5 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 263 | 343 | 1.2E-17 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 260 | 343 | 1.96E-19 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 100 | 139 | 5.4E-9 | IPR036020 |
| Gene3D | G3DSA:2.20.70.10 | - | 101 | 153 | 5.1E-6 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 208 | 344 | 3.6E-25 | IPR027417 |
| SMART | SM00456 | ww_5 | 106 | 139 | 1.6E-5 | IPR001202 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 105 | 139 | 10.876201 | IPR001202 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 268 | 345 | 10.867466 | IPR014001 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 111 | 137 | - | IPR001202 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_039016944.1 | DEAD-box ATP-dependent RNA helicase 14-like isoform X1 [Hibiscus syriacus] | 0 |
| Q8H136 | DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana OX=3702 GN=RH14 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6A3CX68 | DEAD-box ATP-dependent RNA helicase 14 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00002377pilonHSYRG00006 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology