Basic Information
Locus ID:
nbisL1-mrna-10299
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
DNA (cytosine-5)-methyltransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 21595476 | 21603385 | + | nbisL1-mrna-10299 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.09 | 93,534.44 Da | 41.37 | 73.36 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 439 | 800 | 2.4E-32 | IPR001525 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 310 | 800 | 1.42E-77 | IPR029063 |
| Gene3D | G3DSA:2.30.30.490 | - | 112 | 278 | 1.4E-41 | IPR043151 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 601 | 766 | 2.6E-249 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 311 | 817 | 2.6E-249 | - |
| SMART | SM00439 | BAH_4 | 177 | 294 | 1.6E-6 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 309 | 807 | 47.388371 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 177 | 295 | 13.166767 | IPR001025 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 542 | 555 | 9.0E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 496 | 510 | 9.0E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 310 | 326 | 9.0E-11 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 403 | 421 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 129 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 394 | 421 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 129 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 89 | 103 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_021606189.1 | DNA (cytosine-5)-methyltransferase CMT3 [Manihot esculenta] | 0 |
| Q94F88 | DNA (cytosine-5)-methyltransferase CMT3 OS=Arabidopsis thaliana OX=3702 GN=CMT3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2C9W5R9 | Cytosine-specific methyltransferase OS=Manihot esculenta OX=3983 GN=MANES_03G089100 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology