Basic Information
Locus ID:
nbisL1-mrna-10296
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 21570949 | 21573217 | + | nbisL1-mrna-10296 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.54 | 33,720.41 Da | 53.11 | 68.18 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 48 | 85 | 1.10591E-11 | - |
| Pfam | PF03145 | Seven in absentia protein family | 92 | 288 | 1.6E-70 | IPR018121 |
| SUPERFAMILY | SSF57850 | RING/U-box | 42 | 90 | 2.45E-5 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 107 | 289 | 1.77E-39 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 159 | 289 | 2.4E-36 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 99 | 158 | 1.9E-10 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 43 | 92 | 2.8E-5 | IPR013083 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 103 | 163 | 12.351002 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 50 | 86 | 8.86004 | IPR001841 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58040.1 | seven in absentia of Arabidopsis 2. Encodes a RING finger domain containing protein that interacts with AtRAP2.2. | 0 |
| RefSeq | XP_002531645.2 | E3 ubiquitin-protein ligase SINAT2 isoform X1 [Ricinus communis] | 0 |
| Q9M2P4 | E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana OX=3702 GN=SINAT2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2K2Z3 | RING-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology