Basic Information
Locus ID:
nbisL1-mrna-10267
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 6393726 | 6400344 | - | nbisL1-mrna-10267 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 64,374.71 Da | 55.20 | 92.72 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 265 | 556 | 1.12295E-48 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 348 | 385 | 0.052 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 310 | 344 | 0.0029 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 474 | 513 | 0.056 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 519 | 556 | 6.6E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 265 | 299 | 2.4E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 259 | 556 | 1.16E-64 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 522 | 571 | 1.2E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 256 | 521 | 2.7E-59 | IPR015943 |
| SMART | SM00320 | WD40_4 | 347 | 386 | 0.0057 | IPR001680 |
| SMART | SM00320 | WD40_4 | 430 | 468 | 130.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 261 | 300 | 1.7E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 305 | 344 | 9.6E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 388 | 428 | 170.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 472 | 514 | 0.49 | IPR001680 |
| SMART | SM00320 | WD40_4 | 517 | 557 | 7.2E-12 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 312 | 349 | 11.154684 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 268 | 309 | 12.647216 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 312 | 353 | 14.585471 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 95 | 152 | 9.029364 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 524 | 566 | 14.852817 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 268 | 302 | 10.469233 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 62 | 94 | 7.661885 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 366 | 387 | 9.305395 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 524 | 560 | 11.919224 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 373 | 387 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 287 | 301 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_038994553.1 | WD repeat-containing protein 26 homolog [Hibiscus syriacus] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A3B1B1 | Transducin family protein / WD-40 repeat family protein isoform 2 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110328pilonHSYRG01030 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology