Basic Information
Locus ID:
nbisL1-mrna-10246
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Short Name:
ABCC5
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000133F_pilon | 1391450 | 1403305 | + | nbisL1-mrna-10246 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.74 | 213,516.09 Da | 39.22 | 106.43 | 0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1237 | 1457 | 3.40445E-124 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 920 | 1214 | 2.08855E-94 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 327 | 614 | 1.15679E-104 | IPR044746 |
| CDD | cd05271 | NDUFA9_like_SDR_a | 1538 | 1873 | 1.15339E-86 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 923 | 1164 | 6.6E-27 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 658 | 705 | 2.6E-6 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 329 | 594 | 1.7E-30 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 733 | 764 | 3.3E-7 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1256 | 1404 | 3.3E-30 | IPR003439 |
| Pfam | PF04321 | RmlD substrate binding domain | 1721 | 1829 | 9.5E-5 | IPR029903 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 633 | 817 | 1.84E-37 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 315 | 622 | 4.05E-38 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 919 | 1219 | 3.53E-50 | IPR036640 |
| SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 1540 | 1858 | 2.1E-38 | IPR036291 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1228 | 1474 | 3.2E-68 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 732 | 833 | 3.8E-18 | IPR027417 |
| Gene3D | G3DSA:3.40.50.720 | - | 1540 | 1848 | 7.6E-34 | - |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 296 | 623 | 3.4E-55 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 881 | 1219 | 8.6E-59 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1223 | 1476 | 1.4E-80 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 635 | 731 | 4.7E-23 | IPR027417 |
| SMART | SM00382 | AAA_5 | 667 | 827 | 3.5E-10 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1265 | 1450 | 9.3E-15 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 329 | 606 | 37.027866 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 922 | 1192 | 35.81477 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1239 | 1473 | 18.154058 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 633 | 862 | 14.832747 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 737 | 751 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 871 | 892 | - | - |
| Coils | Coil | Coil | 877 | 897 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04120.1 | multidrug resistance-associated protein 5. encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. | 0 |
| RefSeq | XP_021630976.2 | ABC transporter C family member 5 [Manihot esculenta] | 0 |
| Q7GB25 | ABC transporter C family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803PGG4 | ABC-type xenobiotic transporter OS=Cannabis sativa OX=3483 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology