Basic Information
Locus ID:
nbisL1-mrna-10237
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000133F_pilon | 1333978 | 1337029 | + | nbisL1-mrna-10237 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 61,791.46 Da | 41.95 | 88.70 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 239 | 533 | 1.29878E-46 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 497 | 533 | 2.9E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 238 | 274 | 9.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 284 | 319 | 0.029 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 323 | 363 | 0.0083 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 232 | 533 | 2.75E-62 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 229 | 533 | 1.7E-64 | IPR015943 |
| SMART | SM00320 | WD40_4 | 280 | 319 | 1.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 235 | 274 | 1.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 407 | 445 | 8.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 449 | 491 | 7.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 365 | 405 | 180.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 322 | 363 | 1.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 494 | 534 | 5.1E-9 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 72 | 129 | 8.945726 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 287 | 328 | 14.318126 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 242 | 275 | 8.834696 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 501 | 543 | 14.017362 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 287 | 323 | 11.075592 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 242 | 275 | 10.508451 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 501 | 533 | 11.391954 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 39 | 71 | 8.369021 | IPR006594 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43920.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_021631089.1 | WD repeat-containing protein WDS homolog isoform X1 [Manihot esculenta] | 0 |
| Q9FND4 | WD repeat-containing protein WDS homolog OS=Arabidopsis thaliana OX=3702 GN=WDS PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JV79 | Uncharacterized protein MANES_12G039300 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology