Basic Information
Locus ID:
nbisL1-mrna-10208
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Kelch repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 20569171 | 20573597 | - | nbisL1-mrna-10208 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.36 | 48,816.56 Da | 27.59 | 72.22 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01344 | Kelch motif | 170 | 216 | 7.1E-6 | IPR006652 |
| Pfam | PF13418 | Galactose oxidase, central domain | 118 | 164 | 3.0E-7 | - |
| SUPERFAMILY | SSF117281 | Kelch motif | 108 | 391 | 1.44E-42 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 71 | 301 | 5.9E-34 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 303 | 435 | 2.9E-10 | IPR015915 |
| SMART | SM00612 | kelc_smart | 130 | 177 | 6.9 | IPR006652 |
| SMART | SM00612 | kelc_smart | 180 | 229 | 0.089 | IPR006652 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 73 | 88 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 88 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G51540.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_002521918.1 | kelch repeat-containing protein At3g27220 [Ricinus communis] | 0 |
| Q9LK31 | Kelch repeat-containing protein At3g27220 OS=Arabidopsis thaliana OX=3702 GN=At3g27220 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2K354 | Kelch repeat-containing protein At3g27220-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg17949, jg40447 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6624 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028622 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26816, Sbi_jg33747 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8442 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011689 |
| Amaranthaceae | Suaeda glauca | 10 | Sgl03691, Sgl08802, Sgl23243, Sgl28313, Sgl63773, Sgl68266 ... |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008174, gene:ENSEOMG00000037686 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0007550, CQ.Regalona.r1.9BG0007620 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30023990, pistato.v30131290 |
| Apiaceae | Apium graveolens | 2 | Ag3G00897, Ag9G01014 |
| Arecaceae | Cocos nucifera | 3 | COCNU_02G013040, COCNU_11G002150, scaffold000154G000020 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103715189, gene-LOC103715865 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.994.V1.1, AsparagusV1_04.2002.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G23909, Ftri18G25069 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G51540.1, AT3G27220.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10004265m.g.v1.0, Thhalv10011521m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g38190.v2.2, Sp2g16350.v2.2, Sp3g19070.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g067390.2N, BniB07g031700.2N, BniB07g050100.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G1005, Ceq02G1972 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G1051, Cgl02G2045 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno05g02110, gene.Cymno08g05010 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0711s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g26930, gene.Thate08g08240 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-10856, nbisL1-mrna-11402 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.668, evm.TU.LG05.182 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00017998, Pov_00027792, Pov_00034046 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb2G15046, Lb4G22325, Lb4G22424, Lb6G30139 |
| Poaceae | Echinochloa crus-galli | 6 | AH08.221, AH09.1372, BH08.196, BH09.1553, CH08.235 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_4AG0312900, gene-QOZ80_4BG0344060 ... |
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.2HG0176960.1, HORVU.MOREX.r3.7HG0703270.1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_033563, gene-QYE76_044790 |
| Poaceae | Oryza coarctata | 4 | Oco07G009100, Oco08G009000, Oco15G001190, Oco16G001340 |
| Poaceae | Oryza sativa | 2 | LOC_Os04g41020.1, LOC_Os08g03420.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_06G141000, gene-BS78_07G030700 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0206847, Pt_Chr0307206, Pt_Chr0402577, Pt_Chr0402578 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr20G013090, Chr23G010170, Chr25G009460, Chr26G009570 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G597800, Tel7E01G537100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG050060, gene_TRIDC2BG053010 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G345800.1, TraesCS2B02G364200.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb079150_P002, Zm00001eb173320_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-36927, nbis-gene-41480 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g19945, Zma_g23553 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG03.1203, evm.TU.LG12.542, evm.TU.LG19.210 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g04630, gene.Posoc05g14820 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_3_RagTag.2002, evm.TU.Scaffold_7_RagTag.1673 ... |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-10208, nbisL1-mrna-19865, nbisL1-mrna-2467 ... |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-13099, nbisL1-mrna-6399, nbisL1-mrna-6808 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-13597, nbisL1-mrna-17742, nbisL1-mrna-3150 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000002l.62, evm.TU.utg000018l.903 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00002136, Maker00002839, Maker00011632 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-11986, nbisL1-mrna-13252 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12363 |
| Salicaceae | Populus euphratica | 3 | populus_peu01196, populus_peu05968, populus_peu19830 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132622627, gene-LOC132633594 |
| Solanaceae | Solanum chilense | 2 | SOLCI000007500, SOLCI004688000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107011067, gene-LOC107015063 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.21237_chr09_+, gene_276 |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G0519, TC10G1877 |
| Zosteraceae | Zostera marina | 5 | Zosma03g21800.v3.1, Zosma03g21810.v3.1, Zosma03g22060.v3.1 ... |