Basic Information
Locus ID:
nbisL1-mrna-10172
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Short Name:
UBP16
Description:
ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000355F_pilon | 3242844 | 3250079 | - | nbisL1-mrna-10172 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.88 | 105,695.51 Da | 54.10 | 67.42 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 77 | 114 | 4.8E-8 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 471 | 753 | 1.1E-31 | IPR001394 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 74 | 117 | 1.17E-9 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 509 | 755 | 2.16E-66 | IPR038765 |
| Gene3D | G3DSA:6.10.140.2220 | - | 65 | 117 | 9.2E-12 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 439 | 759 | 1.6E-72 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 77 | 114 | 11.602668 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 423 | 756 | 39.402306 | IPR028889 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 77 | 114 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 370 | 391 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 830 | 861 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 771 | 795 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 370 | 394 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 905 | 919 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 234 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 422 | 441 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 768 | 795 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 895 | 922 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_043808900.1 | ubiquitin carboxyl-terminal hydrolase 17 [Manihot esculenta] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2L7C0 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology