Basic Information
Locus ID:
nbisL1-mrna-10142
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Polysaccharide lyase family 4, domain III
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000355F_pilon | 3025850 | 3038631 | + | nbisL1-mrna-10142 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 100,925.12 Da | 34.65 | 76.21 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10320 | RGL4_N | 245 | 539 | 1.79899E-82 | - |
| CDD | cd10316 | RGL4_M | 570 | 669 | 3.17167E-35 | IPR029413 |
| CDD | cd10317 | RGL4_C | 681 | 868 | 6.63071E-58 | - |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 235 | 439 | 6.8E-92 | IPR010325 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 593 | 663 | 1.6E-26 | IPR029413 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 679 | 867 | 7.6E-56 | IPR029411 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 253 | 532 | 6.28E-7 | IPR011013 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 676 | 868 | 1.02E-52 | IPR008979 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 570 | 661 | 4.32E-9 | IPR013784 |
| Gene3D | G3DSA:2.60.40.1120 | - | 568 | 666 | 1.6E-7 | - |
| Gene3D | G3DSA:2.60.120.260 | - | 677 | 868 | 2.1E-21 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 247 | 542 | 3.0E-7 | IPR014718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 98 | 151 | 1.0E-7 | IPR013083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 182 | 205 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09910.1 | Rhamnogalacturonate lyase family protein. | 0 |
| RefSeq | XP_021642377.1 | probable rhamnogalacturonate lyase B [Hevea brasiliensis] | 0 |
| TrEMBL | A0A2P2INM9 | rhamnogalacturonan endolyase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology