Basic Information
Locus ID:
nbisL1-mrna-10083
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
U3 small nucleolar RNA-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000355F_pilon | 2468268 | 2469834 | - | nbisL1-mrna-10083 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.17 | 14,609.59 Da | 44.38 | 85.26 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 13 | 91 | 3.87E-7 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 4 | 103 | 6.3E-7 | IPR015943 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G07410.1 | Transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_034897338.1 | WD repeat-containing protein PCN-like isoform X2 [Populus alba] | 0 |
| Q8RXU6 | WD repeat-containing protein PCN OS=Arabidopsis thaliana OX=3702 GN=PCN PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2LVA7 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19285 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19243 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6663 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.640 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13124 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10083 |