Basic Information
Locus ID:
nbisL1-mrna-10078
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 19396072 | 19399355 | + | nbisL1-mrna-10078 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.78 | 40,098.77 Da | 46.77 | 93.85 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16474 | RING-H2_RNF111_like | 301 | 345 | 6.52551E-18 | - |
| Pfam | PF13639 | Ring finger domain | 301 | 343 | 1.3E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 295 | 347 | 4.24E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 282 | 350 | 8.2E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 302 | 342 | 7.4E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 302 | 343 | 12.459772 | IPR001841 |
| Coils | Coil | Coil | 351 | 353 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G68070.1 | Zinc finger, C3HC4 type (RING finger) family protein. | 0 |
| RefSeq | XP_021668315.1 | E3 ubiquitin-protein ligase At4g11680-like isoform X3 [Hevea brasiliensis] | 0 |
| Q93Z92 | E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana OX=3702 GN=At4g11680 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2C9VFX2 | RING-type domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_08G066900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg15777 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19131 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022340 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g064080 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg58971, Sbi_jg63644 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23239 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012906 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02397, Sgl07547 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000013050, gene:ENSEOMG00000047361 |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.3AG0023840, CQ.Regalona.r1.3AG0023850 ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0829 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0940 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00000135 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG07.2058, evm.TU.LG13.1660, evm.TU.LG15.1079 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1570 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-10078, nbisL1-mrna-19898 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19378 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13503 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.132, evm.TU.utg000018l.842 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003796, Maker00011826 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-13171, nbisL1-mrna-3165 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11369, nbisL1-mrna-12259 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132607315 |
| Solanaceae | Solanum chilense | 1 | SOLCI000034800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002046 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_12393 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G2049 |