Basic Information
Locus ID:
nbisL1-mrna-10074
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 4735922 | 4738353 | - | nbisL1-mrna-10074 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.27 | 68,088.14 Da | 39.27 | 90.21 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18312 | BTB_POZ_NPY3-like | 21 | 124 | 4.60655E-46 | - |
| Pfam | PF00651 | BTB/POZ domain | 29 | 118 | 3.4E-6 | IPR000210 |
| Pfam | PF03000 | NPH3 family | 211 | 461 | 9.1E-86 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 22 | 117 | 1.18E-15 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 16 | 120 | 6.5E-11 | IPR011333 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 211 | 485 | 85.27652 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 29 | 97 | 9.806314 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 500 | 524 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 572 | 613 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 574 | 596 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 500 | 528 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G37590.1 | Phototropic-responsive NPH3 family protein. A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. | 0 |
| RefSeq | XP_017985428.1 | PREDICTED: BTB/POZ domain-containing protein NPY5 [Theobroma cacao] | 0 |
| Q0WL52 | Phototropic-responsive NPH3 family protein NPY5 OS=Arabidopsis thaliana OX=3702 GN=NPY5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A061DP16 | Phototropic-responsive NPH3 family protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_000776 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology