Basic Information
Locus ID:
nbisL1-mrna-10065
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
WD repeat domain phosphoinositide-interacting protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 4640540 | 4644072 | + | nbisL1-mrna-10065 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.46 | 48,337.19 Da | 56.16 | 80.11 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 311 | 336 | 0.0076 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 84 | 345 | 2.6E-30 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 103 | 417 | 3.0E-19 | IPR015943 |
| SMART | SM00320 | WD40_4 | 296 | 337 | 0.042 | IPR001680 |
| SMART | SM00320 | WD40_4 | 253 | 293 | 0.021 | IPR001680 |
| SMART | SM00320 | WD40_4 | 171 | 206 | 440.0 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 43 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 86 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 86 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_012082714.1 | autophagy-related protein 18a [Jatropha curcas] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2LL31 | Autophagy-related protein 18a-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology