Basic Information
Locus ID:
nbisL1-mrna-1006
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Sister chromatid cohesion protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 10172348 | 10181536 | + | nbisL1-mrna-1006 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 80,298.12 Da | 41.59 | 83.94 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 593 | 635 | 4.51E-6 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 65 | 267 | 5.76E-8 | IPR016024 |
| Gene3D | G3DSA:2.30.30.140 | - | 593 | 642 | 2.2E-9 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 353 | 372 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 666 | 693 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 551 | 571 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 384 | 493 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 666 | 721 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 526 | 580 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 462 | 490 | - | - |
| Coils | Coil | Coil | 26 | 46 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80810.5 | - | 0 |
| RefSeq | XP_021661427.1 | uncharacterized protein LOC110650663 isoform X2 [Hevea brasiliensis] | 0 |
| A8MRD9 | Sister chromatid cohesion protein PDS5 homolog D OS=Arabidopsis thaliana OX=3702 GN=PDS5D PE=2 SV=3 | 0 | |
| TrEMBL | A0A2P2K6B3 | PHD-type domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology