Basic Information
Locus ID:
nbisL1-mrna-10058
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 19230872 | 19237369 | - | nbisL1-mrna-10058 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.30 | 57,134.31 Da | 62.69 | 83.85 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 275 | 323 | 7.15363E-15 | - |
| Pfam | PF12906 | RING-variant domain | 275 | 322 | 4.1E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 271 | 326 | 2.42E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 260 | 331 | 3.4E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 274 | 323 | 4.7E-19 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 267 | 329 | 19.4918 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 106 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 465 | 520 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 465 | 487 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_038696150.1 | uncharacterized protein LOC119993207 isoform X2 [Tripterygium wilfordii] | 0 |
| TrEMBL | A0A7J7BV64 | RING-CH-type domain-containing protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW23G00289 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology