Basic Information
Locus ID:
nbisL1-mrna-10039
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000011F_pilon | 4259960 | 4267239 | + | nbisL1-mrna-10039 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.85 | 100,965.18 Da | 40.44 | 82.90 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 546 | 586 | 1.53187E-18 | - |
| Pfam | PF16135 | Tify domain binding domain | 480 | 530 | 8.4E-16 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 237 | 292 | 5.3E-13 | IPR032308 |
| Pfam | PF00628 | PHD-finger | 547 | 588 | 4.8E-8 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 533 | 591 | 4.94E-16 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 628 | 690 | 2.1E-8 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 630 | 693 | 1.4E-10 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 533 | 622 | 1.3E-17 | IPR013083 |
| SMART | SM00249 | PHD_3 | 634 | 691 | 1.5E-4 | IPR001965 |
| SMART | SM00249 | PHD_3 | 546 | 587 | 1.9E-11 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 544 | 589 | 10.326599 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 547 | 586 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 368 | 389 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 368 | 386 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G36720.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_021657820.1 | uncharacterized protein LOC110648013 isoform X3 [Hevea brasiliensis] | 0 |
| Q6PDQ2 | Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus OX=10090 GN=Chd4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MRG7 | PHD-type domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology