Basic Information
Locus ID:
nbisL1-mrna-10028
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
CDPK-related kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 4339535 | 4344419 | + | nbisL1-mrna-10028 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.66 | 69,903.69 Da | 47.56 | 81.07 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 171 | 433 | 4.82963E-135 | - |
| Pfam | PF00069 | Protein kinase domain | 172 | 434 | 1.1E-71 | IPR000719 |
| SUPERFAMILY | SSF47473 | EF-hand | 462 | 616 | 2.58E-17 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 169 | 462 | 9.71E-85 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 165 | 260 | 2.2E-23 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 261 | 450 | 1.0E-60 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 459 | 613 | 2.0E-18 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 452 | 543 | 2.0E-18 | - |
| SMART | SM00220 | serkin_6 | 172 | 434 | 3.3E-101 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 172 | 434 | 52.258358 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 476 | 511 | 8.54379 | IPR002048 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 178 | 204 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 296 | 308 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 55 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 95 | 119 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 80 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 73 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G50530.1 | CDPK-related kinase. CDPK-related kinase | 0 |
| RefSeq | XP_039001069.1 | CDPK-related kinase 5-like [Hibiscus syriacus] | 0 |
| Q9SCS2 | CDPK-related kinase 5 OS=Arabidopsis thaliana OX=3702 GN=CRK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6J1BMT7 | CDPK-related kinase 5 OS=Herrania umbratica OX=108875 GN=LOC110429171 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology