Basic Information
Locus ID:
nbisL1-mrna-10001
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
40S ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000011F_pilon | 4050221 | 4051652 | + | nbisL1-mrna-10001 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.96 | 14,178.46 Da | 32.63 | 86.61 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00338 | Ribosomal protein S10p/S20e | 28 | 123 | 1.1E-25 | IPR027486 |
| SUPERFAMILY | SSF54999 | Ribosomal protein S10 | 26 | 124 | 4.84E-28 | IPR036838 |
| Gene3D | G3DSA:3.30.70.600 | Ribosomal protein S10 domain | 12 | 126 | 1.2E-45 | IPR036838 |
| SMART | SM01403 | Ribosomal_S10_2 | 28 | 123 | 4.1E-35 | IPR027486 |
| TIGRFAM | TIGR01046 | uS10_euk_arch: ribosomal protein uS10 | 25 | 124 | 2.0E-38 | IPR005729 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 84 | 98 | 6.1E-11 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 62 | 77 | 6.1E-11 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 26 | 39 | 6.1E-11 | IPR001848 |
| Hamap | MF_00508 | 30S ribosomal protein S10 [rpsJ]. | 24 | 124 | 16.015257 | IPR001848 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G45030.1 | Ribosomal protein S10p/S20e family protein. | 0 |
| RefSeq | XP_012090410.1 | 40S ribosomal protein S20-1 [Jatropha curcas] | 0 |
| P49200 | Small ribosomal subunit protein uS10z/uS10x OS=Arabidopsis thaliana OX=3702 GN=RPS20A PE=2 SV=2 | 0 | |
| TrEMBL | A0A067JES0 | Ribosomal_S10 domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_26227 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology