Basic Information
Locus ID:
nbis-gene-9865
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00008.1 | 1597381 | 1603696 | + | nbis-gene-9865 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.13 | 112,912.37 Da | 47.65 | 67.27 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 181 | 487 | 6.47694E-161 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 182 | 486 | 9.5E-42 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 181 | 488 | 1.57E-85 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 84 | 126 | 4.19E-6 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 179 | 494 | 5.1E-90 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 72 | 128 | 4.3E-7 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 182 | 489 | 49.129974 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 183 | 198 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 864 | 886 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 798 | 830 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 803 | 817 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24640.1 | ubiquitin-specific protease 19. | 0 |
| RefSeq | XP_004965693.1 | ubiquitin carboxyl-terminal hydrolase 19 [Setaria italica] | 0 |
| Q9SJA1 | Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana OX=3702 GN=UBP19 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5J9TBL9 | MYND-type domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_41792 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology