Basic Information
Locus ID:
nbis-gene-9633
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00008.1 | 590557 | 593449 | + | nbis-gene-9633 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.69 | 39,074.03 Da | 54.23 | 89.69 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 249 | 321 | 4.42501E-40 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 116 | 256 | 1.7E-34 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 158 | 347 | 3.16E-32 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 85 | 260 | 3.4E-52 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 57 | 273 | 4.6E-55 | IPR027417 |
| SMART | SM00487 | ultradead3 | 110 | 304 | 5.9E-35 | IPR014001 |
| SMART | SM00490 | helicmild6 | 240 | 312 | 6.5E-22 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 91 | 119 | 10.920789 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 122 | 295 | 22.844961 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 152 | 351 | 20.97065 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 238 | 246 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 61 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 55 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.1 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_025811222.1 | eukaryotic initiation factor 4A-3 [Panicum hallii] | 0 |
| P35683 | Eukaryotic initiation factor 4A-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0701100 PE=2 SV=2 | 0 | |
| TrEMBL | A0A1W0VUR3 | Eukaryotic initiation factor 4A-11 OS=Sorghum bicolor OX=4558 GN=SORBI_3010G251100 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology