Basic Information
Locus ID:
nbis-gene-9572
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Lipopolysaccharide kinase (Kdo/WaaP) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00008.1 | 326839 | 332761 | - | nbis-gene-9572 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.54 | 31,377.45 Da | 57.32 | 64.78 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 168 | 247 | 1.1E-10 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 160 | 257 | 1.52E-18 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 164 | 250 | 1.4E-17 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 168 | 297 | 12.329808 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 174 | 200 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 94 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 119 | 149 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 66 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46700.1 | CDPK-related kinase 3. | 0 |
| RefSeq | XP_044958497.1 | CDPK-related kinase 3 [Hordeum vulgare subsp. vulgare] | 0 |
| Q9ZUZ2 | CDPK-related kinase 3 OS=Arabidopsis thaliana OX=3702 GN=CRK3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A835BBM2 | Protein kinase domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_043305 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah026154 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000031586 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G001000 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr12G025550, Chr20G005450 |
| Poaceae | Thinopyrum elongatum | 6 | Tel3E01G186100, Tel3E01G532600, Tel3E01G837000 ... |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC2BG076670 |
| Poaceae | Zea mays | 3 | Zm00001eb092830_P001, Zm00001eb180840_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-54473, nbis-gene-9572 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12207 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5699 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011417 |
| Salicaceae | Populus euphratica | 1 | populus_peu14330 |