Basic Information
Locus ID:
nbis-gene-9474
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Polyribonucleotide nucleotidyltransferase, RNA binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00007.1 | 5409672 | 5413107 | + | nbis-gene-9474 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.01 | 64,294.59 Da | 44.12 | 71.81 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 62 | 529 | 1.69E-27 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 321 | 537 | 3.5E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 50 | 320 | 3.1E-10 | IPR015943 |
| SMART | SM00320 | WD40_4 | 495 | 533 | 5.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 386 | 426 | 2.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 336 | 374 | 320.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 51 | 91 | 7.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 133 | 173 | 100.0 | IPR001680 |
| PIRSF | PIRSF037309 | PPA2_B55 | 33 | 536 | 4.7E-118 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 399 | 425 | 6.6E-69 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 322 | 349 | 6.6E-69 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 503 | 532 | 6.6E-69 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 293 | 321 | 6.6E-69 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 237 | 264 | 6.6E-69 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 265 | 292 | 6.6E-69 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 149 | 177 | 6.6E-69 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 70 | 90 | 6.6E-69 | IPR000009 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 177 | 203 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17720.2 | Protein phosphatase 2A, regulatory subunit PR55. type 2A protein serine/threonine phosphatase 55 kDa B | 0 |
| RefSeq | XP_025799077.1 | serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Panicum hallii] | 0 |
| Q5Z8Z7 | Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0563300 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2S3GRC4 | Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B OS=Panicum hallii OX=206008 GN=PAHAL_1G308600 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology