Basic Information
Locus ID:
nbis-gene-9368
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Double-stranded RNA binding motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00007.1 | 4890007 | 4897530 | - | nbis-gene-9368 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 78,461.54 Da | 59.00 | 85.65 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 256 | 365 | 2.2E-7 | IPR004274 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 635 | 697 | 1.39E-10 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 133 | 391 | 5.63E-21 | IPR036412 |
| Gene3D | G3DSA:3.40.50.1000 | - | 133 | 397 | 5.4E-25 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 618 | 698 | 2.4E-6 | - |
| SMART | SM00577 | forpap2 | 224 | 374 | 1.3E-10 | IPR004274 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 139 | 390 | 16.642038 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 661 | 694 | 9.197882 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 520 | 540 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_002452510.1 | RNA polymerase II C-terminal domain phosphatase-like 1 [Sorghum bicolor] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9V0Y9 | protein-serine/threonine phosphatase OS=Eragrostis curvula OX=38414 GN=EJB05_20614 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology