Basic Information
Locus ID:
nbis-gene-9357
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
short chain dehydrogenase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00007.1 | 4842967 | 4851139 | - | nbis-gene-9357 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 124,846.63 Da | 43.95 | 79.26 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01958 | HPS_like | 24 | 87 | 1.67477E-25 | IPR027923 |
| CDD | cd02958 | UAS | 634 | 754 | 1.78254E-27 | - |
| Pfam | PF00106 | short chain dehydrogenase | 221 | 329 | 1.1E-19 | IPR002347 |
| Pfam | PF14555 | UBA-like domain | 492 | 531 | 1.8E-9 | - |
| Pfam | PF00106 | short chain dehydrogenase | 940 | 1022 | 7.0E-15 | IPR002347 |
| Pfam | PF14547 | Hydrophobic seed protein | 26 | 86 | 3.9E-13 | IPR027923 |
| SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 216 | 410 | 2.18E-37 | IPR036291 |
| SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 940 | 1131 | 4.96E-31 | IPR036291 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 835 | 917 | 3.1E-6 | IPR029071 |
| SUPERFAMILY | SSF47699 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin | 30 | 87 | 1.04E-13 | IPR036312 |
| SUPERFAMILY | SSF52833 | Thioredoxin-like | 619 | 753 | 4.92E-22 | IPR036249 |
| Gene3D | G3DSA:3.40.50.720 | - | 938 | 1022 | 2.5E-24 | - |
| Gene3D | G3DSA:3.40.50.720 | - | 214 | 305 | 5.1E-28 | - |
| Gene3D | G3DSA:3.40.50.720 | - | 306 | 424 | 6.4E-24 | - |
| Gene3D | G3DSA:3.40.50.720 | - | 1023 | 1148 | 4.0E-28 | - |
| Gene3D | G3DSA:1.10.110.10 | - | 26 | 92 | 3.6E-17 | IPR036312 |
| Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 636 | 755 | 7.1E-23 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 482 | 536 | 2.2E-6 | - |
| SMART | SM00499 | aai_6 | 27 | 92 | 3.9E-5 | IPR016140 |
| SMART | SM00594 | 45neu3 | 622 | 749 | 1.1E-6 | IPR006577 |
| ProSiteProfiles | PS50033 | UBX domain profile. | 841 | 915 | 10.556205 | IPR001012 |
| PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 941 | 958 | 9.5E-11 | IPR002347 |
| PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 1092 | 1109 | 9.5E-11 | IPR002347 |
| PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 1073 | 1092 | 9.5E-11 | IPR002347 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 555 | 586 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 539 | 586 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 601 | 621 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 429 | 469 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 774 | 839 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61220.2 | NAD(P)-binding Rossmann-fold superfamily protein. | 0 |
| RefSeq | XP_039790689.1 | salutaridine reductase-like [Panicum virgatum] | 0 |
| Q9M2E2 | (+)-neomenthol dehydrogenase OS=Arabidopsis thaliana OX=3702 GN=SDR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0K2W2 | UBX domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 5 | AH03.861, AH07.2773, BH03.985, BH07.2584, CH07.2650 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0138910, gene-QOZ80_2BG0194560 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0117420.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_007415, gene-QYE76_023963, gene-QYE76_023966 ... |
| Poaceae | Oryza coarctata | 3 | Oco04G017190, Oco13G005150, Oco14G006110 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g42800.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G208100 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G013060, Chr09G024940, Chr09G024970, Chr15G015460 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2BG020080, gene_TRIDC6AG036470 |
| Poaceae | Triticum aestivum | 5 | TraesCS2A02G133200.1.cds1, TraesCS2B02G156700.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb185740_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-27667, nbis-gene-9357 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13983 |