Basic Information
Locus ID:
nbis-gene-9161
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00007.1 | 4010284 | 4015046 | - | nbis-gene-9161 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.33 | 24,313.24 Da | 40.49 | 56.76 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 138 | 173 | 3.2E-6 | IPR001680 |
| Pfam | PF18044 | CCCH-type zinc finger | 107 | 127 | 7.7E-6 | IPR041367 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 104 | 128 | 5.36E-6 | IPR036855 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 134 | 203 | 1.63E-10 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 134 | 217 | 3.5E-12 | IPR015943 |
| Gene3D | G3DSA:2.30.30.1190 | - | 100 | 133 | 7.8E-7 | - |
| SMART | SM00356 | c3hfinal6 | 103 | 129 | 0.001 | IPR000571 |
| SMART | SM00320 | WD40_4 | 134 | 173 | 9.0E-6 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 29 | 53 | 0.1 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 28 | 54 | 10.718223 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 141 | 173 | 11.128319 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 103 | 130 | 15.581776 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 141 | 182 | 13.950525 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_039854259.1 | zinc finger CCCH domain-containing protein 17-like [Panicum virgatum] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A835FPK4 | Zinc finger CCCH domain-containing protein 48 OS=Digitaria exilis OX=1010633 GN=HU200_007179 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology