Basic Information
Locus ID:
nbis-gene-9074
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00007.1 | 3697532 | 3703084 | + | nbis-gene-9074 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.57 | 64,205.14 Da | 58.60 | 65.74 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 296 | 339 | 9.66415E-17 | - |
| Pfam | PF13639 | Ring finger domain | 296 | 339 | 7.1E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 282 | 345 | 7.07E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 272 | 345 | 1.6E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 297 | 338 | 2.0E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 297 | 339 | 12.607302 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 470 | 508 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 379 | 441 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 383 | 397 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 404 | 420 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 470 | 491 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G17600.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039790994.1 | E3 ubiquitin-protein ligase Os04g0590900-like [Panicum virgatum] | 0 |
| Q7XLY8 | E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5J9UXR5 | RING-type E3 ubiquitin transferase (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_19592 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology