Basic Information
Locus ID:
nbis-gene-8984
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00007.1 | 3296178 | 3301964 | + | nbis-gene-8984 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.56 | 86,679.52 Da | 43.97 | 92.34 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 273 | 314 | 2.04845E-22 | - |
| Pfam | PF05804 | Kinesin-associated protein (KAP) | 505 | 654 | 5.3E-5 | - |
| Pfam | PF04564 | U-box domain | 270 | 339 | 1.3E-18 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 453 | 714 | 8.64E-23 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 266 | 345 | 5.05E-27 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 269 | 344 | 2.2E-25 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 443 | 733 | 3.8E-23 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 272 | 335 | 2.7E-27 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 268 | 342 | 34.305389 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 218 | 246 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 246 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36550.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_004953617.1 | U-box domain-containing protein 6 [Setaria italica] | 0 |
| O23225 | U-box domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=PUB5 PE=3 SV=3 | 0 | |
| TrEMBL | A0A5J9UYK6 | RING-type E3 ubiquitin transferase (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_19686 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg30884, jg30885, jg39744 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24043 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027469 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g128940 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13259, Sbi_jg52637 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9253 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013297 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl34516, Sgl39930 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004109, gene:ENSEOMG00000007611 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0026880, CQ.Regalona.r1.6BG0028270 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30046560, pistato.v30208000, pistato.v30281930 |
| Apiaceae | Apium graveolens | 1 | Ag5G00506 |
| Arecaceae | Cocos nucifera | 2 | COCNU_05G010160, scaffold018365G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103703727 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.2738.V1.1, AsparagusV1_04.467.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G01254, Ftri6G32933 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G36550.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024500m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g34200.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g088020.2N, BniB02g088330.2N, BniB03g013830.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq05G0410, Ceq05G0411, Ceq05G0429 |
| Casuarinaceae | Casuarina glauca | 9 | Cgl03G1713, Cgl05G0431, Cgl05G0432, Cgl05G0455, Cgl05G0456 ... |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g04630 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g21970 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 4 | nbisL1-mrna-10496, nbisL1-mrna-4404, nbisL1-mrna-7026 ... |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2357 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00013956, Pov_00014056 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb8G35688 |
| Poaceae | Echinochloa crus-galli | 6 | AH06.1478, AH07.3150, BH06.1494, BH07.2981, CH06.1624 ... |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_2BG0198010 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.6HG0607590.1, HORVU.MOREX.r3.7HG0677050.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_024652, gene-QYE76_029747 |
| Poaceae | Oryza coarctata | 4 | Oco03G019330, Oco04G020120, Oco11G008980, Oco12G008960 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g47670.1, LOC_Os06g28590.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_04G042000, gene-BS78_04G248000 ... |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0203931, Pt_Chr0403977 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G004080, Chr09G022240, Chr10G002470, Chr15G005490 |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G500400, Tel7E01G418700 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC6AG041870, gene_TRIDC6BG048860 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS6A02G273100.1, TraesCS6B02G300500.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb252120_P001, Zm00001eb382320_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-22106, nbis-gene-28832, nbis-gene-8984 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g14234, Zma_g16980, Zma_g29660 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG03.1576, evm.TU.LG05.32, evm.TU.LG12.254 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g18280 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_3_RagTag.225, evm.TU.Scaffold_3_RagTag.226 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-17106, nbisL1-mrna-398, nbisL1-mrna-474 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-15605, nbisL1-mrna-1690 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11783, nbisL1-mrna-5967 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.1229, evm.TU.utg000019l.1101 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006942 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-15601, nbisL1-mrna-19370, nbisL1-mrna-6504 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-2346, nbisL1-mrna-3078 |
| Salicaceae | Populus euphratica | 4 | populus_peu15226, populus_peu15227, populus_peu23592 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621514 |
| Solanaceae | Solanum chilense | 3 | SOLCI003941900, SOLCI004994300, SOLCI005541200 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107011592, gene-LOC107012416, gene-LOC107012682 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.16379_chr06_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0244 |