Basic Information
Locus ID:
nbis-gene-8831
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00007.1 | 2683808 | 2687069 | - | nbis-gene-8831 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.70 | 40,267.70 Da | 54.54 | 80.48 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 75 | 118 | 1.24695E-14 | - |
| Pfam | PF13639 | Ring finger domain | 285 | 328 | 8.2E-13 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 75 | 118 | 6.7E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 268 | 334 | 5.55E-19 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 67 | 124 | 1.93E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 55 | 127 | 1.3E-19 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 248 | 333 | 5.6E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 286 | 327 | 2.3E-7 | IPR001841 |
| SMART | SM00184 | ring_2 | 76 | 117 | 1.2E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 286 | 328 | 12.887609 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 76 | 118 | 12.946621 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 368 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 345 | 368 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G17450.1 | RING-H2 finger A3A. Encodes a putative RING-H2 finger protein RHA3a. | 0 |
| RefSeq | XP_012698697.1 | E3 ubiquitin-protein ligase ATL23 [Setaria italica] | 0 |
| O22755 | Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=ATL44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1E5WEF3 | RING-type E3 ubiquitin transferase OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0003214 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology