Basic Information
Locus ID:
nbis-gene-8777
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
U-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00007.1 | 2415979 | 2417469 | + | nbis-gene-8777 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.98 | 53,359.27 Da | 42.83 | 100.77 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 87 | 128 | 8.61214E-21 | - |
| Pfam | PF04564 | U-box domain | 83 | 153 | 1.7E-19 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 249 | 477 | 3.03E-18 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 74 | 154 | 6.18E-28 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 75 | 153 | 2.2E-27 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 266 | 487 | 5.3E-19 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 86 | 149 | 3.2E-27 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 82 | 156 | 28.98028 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_039791383.1 | U-box domain-containing protein 21-like [Panicum virgatum] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9UYX5 | RING-type E3 ubiquitin transferase (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_19965 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology