Basic Information
Locus ID:
nbis-gene-8596
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00007.1 | 1614232 | 1615665 | - | nbis-gene-8596 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.59 | 52,133.44 Da | 62.62 | 68.76 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 334 | 376 | 2.21346E-25 | - |
| Pfam | PF14369 | zinc-ribbon | 165 | 198 | 7.7E-12 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 334 | 376 | 3.2E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 315 | 380 | 1.39E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 298 | 382 | 3.3E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 335 | 375 | 6.7E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 335 | 376 | 12.371254 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 386 | 407 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 245 | 278 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 242 | 279 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 386 | 404 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60360.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_008646313.1 | probable E3 ubiquitin-protein ligase RHC1A [Zea mays] | 0 |
| Q8LPN7 | E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1 | 0 | |
| TrEMBL | A0A811PWU2 | RING-type E3 ubiquitin transferase OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS33185 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology