Basic Information
Locus ID:
nbis-gene-8460
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
RNA splicing
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00007.1 | 985853 | 989412 | - | nbis-gene-8460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 16,469.61 Da | 49.63 | 92.28 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 20 | 81 | 9.4E-10 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 20 | 85 | 5.97E-12 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 10 | 94 | 2.9E-14 | IPR036770 |
| SMART | SM00248 | ANK_2a | 50 | 79 | 5.1E-6 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 50 | 81 | 12.7794 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 50 | 82 | 13.89137 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_044950878.1 | probable E3 ubiquitin-protein ligase XBOS32 [Hordeum vulgare subsp. vulgare] | 0 |
| Q6KAE5 | Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS32 PE=2 SV=2 | 0 | |
| TrEMBL | A0A453PU66 | ANK_REP_REGION domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology