Basic Information
Locus ID:
nbis-gene-8270
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00007.1 | 178238 | 180499 | - | nbis-gene-8270 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 64,555.00 Da | 54.94 | 70.26 | -0.77 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 316 | 508 | 6.7E-19 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 292 | 502 | 3.14E-36 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 383 | 567 | 3.8E-19 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 278 | 382 | 2.6E-15 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 308 | 583 | 17.573523 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 164 | 178 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 152 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 325 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 77 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 558 | 585 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 91 | 115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 164 | 202 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 118 | 134 | - | - |
| Coils | Coil | Coil | 235 | 269 | - | - |
| Coils | Coil | Coil | 179 | 231 | - | - |
| Coils | Coil | Coil | 148 | 168 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_025799164.1 | U-box domain-containing protein 33-like isoform X1 [Panicum hallii] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2S3GUR7 | RING-type E3 ubiquitin transferase OS=Panicum hallii OX=206008 GN=PAHAL_1G453400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH07.3789, BH07.3609, CH07.316, CH07.3685 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0151050, gene-QOZ80_2BG0206470 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0478990.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_037771 |
| Poaceae | Oryza coarctata | 2 | Oco03G025760, Oco04G026230 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g57700.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G324800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0604597, Pt_Chr0605662 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G026650, Chr13G000470 |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G339600, Tel5E01G341900 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC5AG032910, gene_TRIDC5AG033150 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS5A02G203900.1, TraesCS5A02G205800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb190970_P005 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-39767, nbis-gene-8270 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g17452 |