Basic Information
Locus ID:
nbis-gene-7973
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00006.1 | 3146252 | 3146889 | + | nbis-gene-7973 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 14,928.83 Da | 67.19 | 79.51 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04564 | U-box domain | 97 | 121 | 5.9E-6 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 87 | 119 | 6.45E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 89 | 125 | 2.0E-8 | IPR013083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 36 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039772432.1 | U-box domain-containing protein 9-like [Panicum virgatum] | 0 |
| TrEMBL | A0A5J9TQZ1 | RING-type E3 ubiquitin transferase (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_37206 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | BH06.1893 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_038730, gene-QYE76_052609, gene-QYE76_070369 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr30G013050 |
| Poaceae | Zea mays | 1 | Zm00001eb241160_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-7973 |