Basic Information
Locus ID:
nbis-gene-7847
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Short Name:
AFB3
Description:
F-box-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00006.1 | 2386362 | 2390529 | + | nbis-gene-7847 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.06 | 26,941.03 Da | 43.35 | 91.81 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 1 | 41 | 6.0E-18 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 61 | 107 | 3.6E-24 | IPR041101 |
| SUPERFAMILY | SSF81383 | F-box domain | 1 | 37 | 7.85E-9 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 18 | 181 | 1.73E-6 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 153 | 212 | 3.0E-6 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 40 | 4.2E-19 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 41 | 152 | 2.3E-38 | IPR032675 |
| SMART | SM00256 | fbox_2 | 4 | 45 | 0.0042 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12820.1 | auxin signaling F-box 3. Auxin receptor involved in primary and lateral root growth inhibition in response to nitrate. Target of miR393. Induced by nitrate in primary roots. | 0 |
| RefSeq | XP_025824574.1 | transport inhibitor response 1-like protein Os04g0395600 [Panicum hallii] | 0 |
| Q7XVM8 | Transport inhibitor response 1-like protein Os04g0395600 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0395600 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9TVC7 | F-box domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_38251 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | contig69197041G000010 |
| Brassicaceae | Brassica nigra | 1 | BniB02g027890.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0057 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0065 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4813 |
| Plantaginaceae | Plantago ovata | 5 | Pov_00013444, Pov_00013446, Pov_00013447, Pov_00013448 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-7847 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG20.1176 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15999 |