Basic Information
Locus ID:
nbis-gene-7754
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00006.1 | 1947306 | 1953454 | - | nbis-gene-7754 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.13 | 48,565.27 Da | 30.43 | 83.72 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00850 | Histone deacetylase domain | 24 | 308 | 1.6E-82 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 6 | 365 | 2.83E-119 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 1 | 377 | 2.0E-136 | IPR037138 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 1 | 424 | 4.4E-209 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 207 | 220 | 3.2E-47 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 224 | 242 | 3.2E-47 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 26 | 43 | 3.2E-47 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 85 | 102 | 3.2E-47 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 147 | 163 | 3.2E-47 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 128 | 151 | 1.9E-22 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 160 | 175 | 1.9E-22 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 246 | 256 | 1.9E-22 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 106 | 126 | 3.2E-47 | IPR003084 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 387 | 425 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 392 | 425 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G44680.1 | histone deacetylase 9. Class I RPD3 type protein | 0 |
| RefSeq | XP_002446401.1 | histone deacetylase 9 isoform X2 [Sorghum bicolor] | 0 |
| Q8H0W2 | Histone deacetylase 9 OS=Arabidopsis thaliana OX=3702 GN=HDA9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A811QRD0 | Histone deacetylase OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS44447 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology