Basic Information
Locus ID:
nbis-gene-775
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00001.1 | 3442475 | 3453907 | + | nbis-gene-775 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.59 | 135,318.55 Da | 53.96 | 82.50 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01868 | Rab11_like | 39 | 248 | 1.40424E-113 | - |
| Pfam | PF00071 | Ras family | 43 | 86 | 7.1E-11 | IPR001806 |
| Pfam | PF00071 | Ras family | 130 | 248 | 3.0E-41 | IPR001806 |
| Pfam | PF03000 | NPH3 family | 880 | 1099 | 9.8E-49 | IPR027356 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 37 | 258 | 9.47E-54 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 33 | 260 | 1.1E-64 | IPR027417 |
| SMART | SM00173 | ras_sub_4 | 39 | 250 | 7.3E-12 | - |
| SMART | SM00175 | rab_sub_5 | 42 | 250 | 5.7E-101 | - |
| SMART | SM00174 | rho_sub_3 | 44 | 246 | 1.2E-10 | IPR001806 |
| TIGRFAM | TIGR00231 | small_GTP: small GTP-binding protein domain | 128 | 244 | 2.9E-26 | IPR005225 |
| ProSiteProfiles | PS51419 | small GTPase Rab1 family profile. | 37 | 284 | 33.714661 | - |
| ProSiteProfiles | PS51421 | small GTPase Ras family profile. | 36 | 358 | 15.09474 | IPR001806 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 880 | 1123 | 53.14246 | IPR027356 |
| ProSiteProfiles | PS51420 | small GTPase Rho family profile. | 35 | 248 | 9.225552 | - |
| PRINTS | PR00449 | Transforming protein P21 ras signature | 190 | 203 | 1.7E-34 | - |
| PRINTS | PR00449 | Transforming protein P21 ras signature | 225 | 247 | 1.7E-34 | - |
| PRINTS | PR00449 | Transforming protein P21 ras signature | 128 | 150 | 1.7E-34 | - |
| PRINTS | PR00449 | Transforming protein P21 ras signature | 42 | 63 | 1.7E-34 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 841 | 855 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 835 | 855 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09630.1 | RAB GTPase 11C. Encodes a putative GTP-binding protein. Associates with organelles on a pathway from the Golgi to the plasma membrane in interphase. In dividing cells acts at the cell plate. | 0 |
| RefSeq | XP_025799330.1 | BTB/POZ domain-containing protein At3g22104-like [Panicum hallii] | 0 |
| O04486 | Ras-related protein RABA2a OS=Arabidopsis thaliana OX=3702 GN=RABA2A PE=2 SV=1 | 0 | |
| TrEMBL | A0A2S3H2Z6 | NPH3 domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_2G401600 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg11009, jg18966, jg21015, jg24174 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_22130, gene_25809 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah017763, Ah037434 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g207600 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg40257, Sbi_jg41856, Sbi_jg48272 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg1841, Seu_jg27611 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011416 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl41637, Sgl46433 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000018414, gene:ENSEOMG00000037366 |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.8AG0003040, CQ.Regalona.r1.8BG0003120 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30018910 |
| Apiaceae | Apium graveolens | 2 | Ag11G03328, Ag4G02015 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G010930, COCNU_14G006940 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103712628, gene-LOC103723872, gene-LOC120106667 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.910.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri12G02800, Ftri5G31611 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G22104.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020575m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g19930.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g040800.2N, BniB07g049510.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G2480, Ceq04G1525 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G2576, Cgl04G1695 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g06240 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g08240, gene.Thate04g04200 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 4 | nbisL1-mrna-1003, nbisL1-mrna-11677, nbisL1-mrna-4818 ... |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG04.2008, evm.TU.LG12.1089 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00004448 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G14870, Lb4G22874, Lb5G28362 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.3292, BH03.3467, CH03.3688 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0571150, gene-QOZ80_7BG0602820 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0137620.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_040723 |
| Poaceae | Oryza coarctata | 2 | Oco13G009470, Oco14G010040 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g36230.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G306800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0306468, Pt_Chr0306511 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr19G004950, Chr24G009420, Chr27G012350, Chr28G008830 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G399200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG028280, gene_TRIDC2BG032000 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G213700.1, TraesCS2B02G238600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb106510_P001, Zm00001eb323550_P002 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-10706, nbis-gene-57496, nbis-gene-775 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g5301, Zma_g6607 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.776, evm.TU.LG20.1123 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g01140 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_13_RagTag.126, evm.TU.Scaffold_5_RagTag.1466 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-11960, nbisL1-mrna-20833, nbisL1-mrna-29627 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-15347, nbisL1-mrna-2651, nbisL1-mrna-2706 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-11022, nbisL1-mrna-20827, nbisL1-mrna-21308 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000003l.818, evm.TU.utg000006l.843 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00009378, Maker00012960, Maker00015273 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-10369, nbisL1-mrna-1239, nbisL1-mrna-6008 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-15421, nbisL1-mrna-16968, nbisL1-mrna-4752 |
| Salicaceae | Populus euphratica | 3 | populus_peu18338, populus_peu22697, populus_peu24128 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132618464, gene-LOC132623270 |
| Solanaceae | Solanum chilense | 2 | SOLCI001678700, SOLCI006053900 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107010655, gene-LOC107024226 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.23180_chr05_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G2255, TC07G2552 |
| Zosteraceae | Zostera marina | 1 | Zosma03g31620.v3.1 |