HalophFGD

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Basic Information
Locus ID: nbis-gene-7484
Species & Taxonomic ID: Zoysia japonica & 309978
Genome Assembly: GCA_040438285.1
Description: Leucine rich repeat N-terminal domain
Maps and Mapping Data
Chromosome Start End Strand ID
Zjn_sc00006.1 644504 654056 + nbis-gene-7484
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
9.84 146,235.80 Da 56.08 86.36 -0.19
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd03401 SPFH_prohibitin 827 1020 7.18102E-88 IPR000163
Pfam PF00560 Leucine Rich Repeat 337 357 1.4 IPR001611
Pfam PF08263 Leucine rich repeat N-terminal domain 179 213 4.6E-6 IPR013210
Pfam PF01145 SPFH domain / Band 7 family 828 1005 3.5E-21 IPR001107
Pfam PF00069 Protein kinase domain 511 655 1.2E-16 IPR000719
SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 511 705 6.88E-33 IPR011009
SUPERFAMILY SSF117892 Band 7/SPFH domain 857 993 3.01E-14 IPR036013
SUPERFAMILY SSF52058 L domain-like 200 359 9.52E-33 -
Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 583 661 5.6E-12 -
Gene3D G3DSA:3.30.479.30 Band 7 domain 854 988 4.8E-6 IPR036013
Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 287 375 7.6E-16 IPR032675
Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 503 581 8.2E-18 -
Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 180 286 3.1E-23 IPR032675
SMART SM00244 PHB_4 825 986 5.5E-42 IPR001107
ProSiteProfiles PS50011 Protein kinase domain profile. 507 773 18.096479 IPR000719
ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 513 535 - IPR017441
PRINTS PR00679 Prohibitin signature 910 928 1.2E-64 IPR000163
PRINTS PR00679 Prohibitin signature 933 949 1.2E-64 IPR000163
PRINTS PR00679 Prohibitin signature 956 975 1.2E-64 IPR000163
PRINTS PR00679 Prohibitin signature 981 1004 1.2E-64 IPR000163
PRINTS PR00679 Prohibitin signature 869 885 1.2E-64 IPR000163
PRINTS PR00679 Prohibitin signature 887 906 1.2E-64 IPR000163
PRINTS PR00679 Prohibitin signature 1004 1020 1.2E-64 IPR000163
MobiDBLite mobidb-lite consensus disorder prediction 451 475 - -
MobiDBLite mobidb-lite consensus disorder prediction 52 72 - -
MobiDBLite mobidb-lite consensus disorder prediction 1256 1271 - -
MobiDBLite mobidb-lite consensus disorder prediction 1256 1277 - -
MobiDBLite mobidb-lite consensus disorder prediction 708 768 - -
MobiDBLite mobidb-lite consensus disorder prediction 56 72 - -
MobiDBLite mobidb-lite consensus disorder prediction 721 752 - -
Coils Coil Coil 985 1005 - -
Gene Ontology
Biological Process:
GO:0006468 (protein phosphorylation)
Molecular Function:
GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)
Cellular Component:
GO:0016020 (membrane)
KEGG Pathway
KO Term:
K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])
Pathway:
ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)
Best hit
Source Best Hit ID Description E-value
TAIR AT5G40770.1 prohibitin 3. prohibitin 3 0
RefSeq XP_039821511.1 probable inactive receptor kinase RLK902 [Panicum virgatum] 0
Swiss-Prot O04331 Prohibitin-3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PHB3 PE=1 SV=1 0
TrEMBL A0A8T0Q0N4 Protein kinase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_7NG248700 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 3 jg17720, jg19884, jg26767
Aizoaceae Mesembryanthemum crystallinum 1 gene_24955
Amaranthaceae Atriplex hortensis 1 Ah012449
Amaranthaceae Beta vulgaris 1 BVRB_6g146320
Amaranthaceae Salicornia bigelovii 2 Sbi_jg42471, Sbi_jg45085
Amaranthaceae Salicornia europaea 1 Seu_jg27080
Amaranthaceae Suaeda aralocaspica 1 GOSA_00002233
Amaranthaceae Suaeda glauca 2 Sgl31812, Sgl83302
Amaranthaceae Chenopodium album 3 gene:ENSEOMG00000001157, gene:ENSEOMG00000001872 ...
gene:ENSEOMG00000027017
Amaranthaceae Chenopodium quinoa 2 CQ.Regalona.r1.6AG0009380, CQ.Regalona.r1.6BG0009900
Anacardiaceae Pistacia vera 4 pistato.v30023910, pistato.v30023940, pistato.v30024170 ...
pistato.v30024200
Arecaceae Cocos nucifera 3 COCNU_08G002020, scaffold025969G000020 ...
scaffold025969G000030
Arecaceae Phoenix dactylifera 3 gene-LOC103717346, gene-LOC103721125, gene-LOC120107735
Asparagaceae Asparagus officinalis 1 AsparagusV1_08.2838.V1.1
Asteraceae Flaveria trinervia 2 Ftri18G20471, Ftri18G27967
Brassicaceae Arabidopsis thaliana 3 AT3G27280.2, AT5G14300.1, AT5G40770.1
Brassicaceae Eutrema salsugineum 3 Thhalv10004748m.g.v1.0, Thhalv10015345m.g.v1.0 ...
Thhalv10027882m.g.v1.0
Brassicaceae Schrenkiella parvula 2 Sp2g16430.v2.2, Sp7g01130.v2.2
Brassicaceae Brassica nigra 3 BniB01g025780.2N, BniB02g067430.2N, BniB07g035840.2N
Casuarinaceae Casuarina equisetifolia 1 Ceq02G1964
Casuarinaceae Casuarina glauca 1 Cgl02G2030
Cymodoceaceae Cymodocea nodosa 1 gene.Cymno02g04430
Dunaliellaceae Dunaliella salina 1 Dusal.0408s00009.v1.0
Hydrocharitaceae Thalassia testudinum 1 gene.Thate05g05350
Malvaceae Hibiscus hamabo Siebold & Zucc. 1 nbisL1-mrna-2285
Nitrariaceae Nitraria sibirica 1 evm.TU.LG05.193
Plantaginaceae Plantago ovata 1 Pov_00027801
Plumbaginaceae Limonium bicolor 2 Lb6G31762, Lb7G35309
Poaceae Echinochloa crus-galli 4 AH09.1260, BH06.2049, CH07.2240, CH09.1477
Poaceae Eleusine coracana subsp. coracana 4 gene-QOZ80_2AG0135260, gene-QOZ80_2BG0190870 ...
gene-QOZ80_4AG0314720, gene-QOZ80_4BG0345760
Poaceae Hordeum vulgare 2 HORVU.MOREX.r3.2HG0173550.1.CDS1 ...
HORVU.MOREX.r3.6HG0586220.1
Poaceae Lolium multiflorum 2 gene-QYE76_023221, gene-QYE76_044431
Poaceae Oryza coarctata 3 Oco03G013610, Oco07G007750, Oco08G007660
Poaceae Oryza sativa 2 LOC_Os02g37000.1, LOC_Os04g38900.1
Poaceae Paspalum vaginatum 2 gene-BS78_04G174800, gene-BS78_06G123800
Poaceae Sporobolus alterniflorus 8 Chr06G009010, Chr09G013300, Chr13G009170, Chr15G010560 ...
Chr23G011470, Chr25G008410, Chr26G008100, Chr30G008280
Poaceae Thinopyrum elongatum 3 Tel2E01G570600, Tel6E01G393000, Tel6E01G458100
Poaceae Triticum dicoccoides 5 gene_TRIDC2AG047760, gene_TRIDC2BG050270 ...
gene_TRIDC6AG029940, gene_TRIDC6BG037210, gene_TRIDC6BG044390
Poaceae Triticum aestivum 8 TraesCS2A02G337100.1.cds1, TraesCS2B02G344800.1.cds1 ...
TraesCS2D02G325800.1.cds1, TraesCS6A02G198500.1, TraesCS6B02G228900.1.cds1, TraesCS6B02G281500.1.cds1, TraesCS6D02G185000.1, TraesCS6D02G225000.1.cds1
Poaceae Zea mays 2 Zm00001eb245230_P001, Zm00001eb424310_P001
Poaceae Zoysia japonica 4 nbis-gene-18701, nbis-gene-29819, nbis-gene-53735 ...
nbis-gene-7484
Poaceae Zoysia macrostachya 4 Zma_g13766, Zma_g16560, Zma_g19849, Zma_g21408
Portulacaceae Portulaca oleracea 2 evm.TU.LG01.2619, evm.TU.LG14.1754
Posidoniaceae Posidonia oceanica 3 gene.Posoc02g26050, gene.Posoc08g00320, gene.Posoc08g00340
Rhizophoraceae Bruguiera sexangula 2 evm.TU.Scaffold_3_RagTag.1989, evm.TU.Scaffold_6_RagTag.84
Rhizophoraceae Carallia pectinifolia 1 nbisL1-mrna-14898
Rhizophoraceae Ceriops tagal 2 nbisL1-mrna-12100, nbisL1-mrna-602
Rhizophoraceae Ceriops zippeliana 2 nbisL1-mrna-3141, nbisL1-mrna-76
Rhizophoraceae Kandelia candel 2 evm.TU.utg000011l.60, evm.TU.utg000019l.23
Rhizophoraceae Kandelia obovata 1 Maker00007252
Rhizophoraceae Rhizophora apiculata 2 nbisL1-mrna-11916, nbisL1-mrna-11991
Rhizophoraceae Rhizophora mangle 1 nbisL1-mrna-17504
Salicaceae Populus euphratica 3 populus_peu01187, populus_peu05203, populus_peu24406
Solanaceae Lycium barbarum 2 gene-LOC132627050, gene-LOC132640532
Solanaceae Solanum chilense 3 SOLCI000690300, SOLCI002063300, SOLCI006160700
Solanaceae Solanum pennellii 3 gene-LOC107004791, gene-LOC107004960, gene-LOC107020527
Tamaricaceae Reaumuria soongarica 1 STRG.13879_chr05_-
Tamaricaceae Tamarix chinensis 1 TC01G3512
Zosteraceae Zostera marina 1 Zosma02g06930.v3.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.