Basic Information
Locus ID:
nbis-gene-7424
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Glycerophosphoryl diester phosphodiesterase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00006.1 | 381572 | 385228 | - | nbis-gene-7424 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 50,218.72 Da | 46.11 | 83.42 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 106 | 361 | 9.0E-35 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 100 | 365 | 2.88E-42 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 35 | 97 | 1.36E-7 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 95 | 368 | 3.2E-36 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 101 | 366 | 33.882805 | IPR030395 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 417 | 437 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 418 | 437 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26690.1 | PLC-like phosphodiesterase family protein. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_034604102.1 | glycerophosphodiester phosphodiesterase GDPDL3-like [Setaria viridis] | 0 |
| Q9SZ11 | Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3 | 0 | |
| TrEMBL | A0A3L6PUA5 | glycerophosphodiester phosphodiesterase OS=Panicum miliaceum OX=4540 GN=C2845_PM16G10680 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology