Basic Information
Locus ID:
nbis-gene-7274
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00005.1 | 5552100 | 5561793 | - | nbis-gene-7274 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.87 | 144,805.77 Da | 41.24 | 79.55 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 909 | 942 | 0.0026 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 439 | 475 | 9.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 478 | 517 | 0.21 | IPR001680 |
| Pfam | PF00025 | ADP-ribosylation factor family | 1241 | 1289 | 3.9E-10 | IPR006689 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 505 | 1040 | 6.51E-39 | IPR011047 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 335 | 652 | 1.98E-40 | IPR036322 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1250 | 1278 | 1.06E-5 | IPR027417 |
| Gene3D | G3DSA:2.130.10.10 | - | 959 | 1110 | 5.4E-6 | IPR015943 |
| Gene3D | G3DSA:3.40.50.300 | - | 1230 | 1291 | 6.6E-12 | IPR027417 |
| Gene3D | G3DSA:2.130.10.10 | - | 732 | 958 | 5.9E-25 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 285 | 527 | 8.7E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 528 | 653 | 9.3E-9 | IPR015943 |
| SMART | SM00668 | ctlh | 34 | 92 | 4.5E-15 | IPR006595 |
| SMART | SM00320 | WD40_4 | 861 | 901 | 2.2 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 3.1E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 389 | 428 | 94.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 817 | 858 | 30.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1058 | 1090 | 140.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 328 | 367 | 0.067 | IPR001680 |
| SMART | SM00320 | WD40_4 | 434 | 475 | 2.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 567 | 610 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 904 | 943 | 2.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 521 | 564 | 110.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 999 | 1035 | 5.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 477 | 518 | 0.0011 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.929255 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 911 | 952 | 12.546961 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 911 | 946 | 9.99469 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 588 | 619 | 9.97376 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.297499 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 441 | 476 | 9.739832 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 462 | 476 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1170 | 1206 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 709 | 725 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 706 | 726 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1168 | 1225 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16830.1 | TOPLESS-related 2. | 0 |
| RefSeq | XP_025816151.1 | protein TPR1 isoform X1 [Panicum hallii] | 0 |
| Q5NBT9 | Protein TPR1 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9UGW4 | WD_REPEATS_REGION domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_32112 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology